Since there has been a conversation of sorts, I'm joining in part way through. I may miss some points above, but I believe I understand a little more where you're coming from and can perhaps be of help now.
But can it not be argued that there's nothing 'natural' (as in natural selection) about artificial immunity & that we're possibly ramping-up the competition between us & pathogens by using an increasing amount of vaccinations? Is this a more dangerous path to take - to 'provoke' pathogens to keep on mutating in order to survive?
Firstly, beware of using words such as 'natural'. It's not a very useful term. Everything is natural. Humans, and what we do are natural. Arsenic is an element - you don't get much more 'natural' than that - and so is Mercury, but I wouldn't advocate gargling them at bedtime.
Secondly, natural selection results from the death of individuals before reproduction. So to advocate increased natural selection among humans is to advocate allowing the deaths of the infirm and disadvantaged. Is that what you're intending?
Thirdly, doctors do not arbitrarily throw vaccines out into the population without careful thought, reasoning, debate, and research. Many government, medical, and educational bodies are involved in vaccine development and deployment, not just "Big Pharma".
Fourthly, "Big Pharma" is not necessarily working for the benefit of humanity, but beware because neither are the many misguided anti-vaxers, and well-meaning but misinformed members of the media and the public at large.
Fifth, vaccines use our own immune systems in the way that they evolved to operate to fight disease. Our immune systems have an innate ability to respond to an infection and to create a memory of that infection in order to better respond in future. A vaccine triggers our immune system to respond as if a virulent infection has occurred, when it has not (or has in a very weakened state), and develop an "immunity memory" against that infection. Depending on the type of vaccine, the specificity of that memory (and the exact nature of immune stimulation introduced to the body) will vary.
Our bodies already do this by themselves all the time. Every time you catch a sniffle, and many times when you notice nothing at all, your immune system is working to recognize and prepare to combat pathogens and recognize and not overreact to more innocuous environment agents. It's an especially common part of growing up, and when it goes wrong that's how you get things like allergies - overresponse of the immune system to an innocuous agent.
Are vaccines without risk? No, and the medical establishment have never said so. It is well known that vaccines themselves may result in allergic reactions, for example. A given vaccine is carefully weighed against the potential for harm by the disease vs. vaccine before a decision is made to introduce the vaccine to the public at large. That said, vaccines are relatively safe compared to the diseases they prevent.
Sixth, vaccination does not provoke pathogens to mutate, that is their own innate behavior. Vaccines don't affect natural selection of the pathogen directly, although they prevent selection of humans - but that is how we operate as a compassionate society. Allowing some humans to die in order to allow a given infection to propagate will not prevent that infection from mutating at any later point.
Because it doesn't act on the pathogens directly, vs. say an antibiotic on bacteria, it is possible to eradicate a disease by widespread vaccination, as was done with smallpox. There are several diseases (Polio, for example) that should have been similarly eradicated by now if vaccination was better implemented.
Seventh, pathogens don't 'want' anything. It is possible for infections to reach a stable state where the impact on the population is non-lethal by selection pressures on the host population to develop resistance. At any point the pathogen might then mutate to become more virulent, resulting in more frequent deaths until the population is selected for resistance again. It's also possible for a pathogen to be completely virulent to the point of wiping out most or all of the population - see the contagious tumors currently destroying the Tasmanian Devil population. It might be an evolutionary dead-end for the pathogen, but that's little comfort to the dead population.
Eighth, it's common to forget how our global society has changed the nature of disease transmission. It is now extremely easy for pockets of new, mutated, or non-eradicated virulent infections to be tapped and rapidly spread. The threat is real, and the response must be ready, and where possible implemented in advance.
Finally, many forget that the diseases being vaccinated against are god-damn fucking awful diseases, that - before widespread vaccination - killed many and maimed many others. This includes influenza, not to mention measles, mumps, and rubella, chicken pox, smallpox, etc.
I'm not providing a bunch of references, just writing from my knowledge of immunology, which has faded a little since uni, so I may strike some wrong notes, but I hope I have given you a better overall picture of what's involved.
EDIT: I'm going to address some more points you made earlier.
I think most people are primed to reach for the medicine cabinet the minute they feel a sniff, but perhaps it's time we stopped doing that? For example, getting a raised temperature is a normal part of the immune system when fighting an invader & in many circumstances, instead of reaching for the paracetemol, we'd probably be better off leaving the body to get on with it.
This is a very specific point and unrelated to vaccines. I won't get into it in detail therefore, but I suggest you ask about fever vs. fever suppression in a separate question.
I would say, however, that you can't generalize effectively about whether a given medical remedy (when provided to alleviate symptoms) is preferable or not to allowing the patient to suffer the symptoms. There are cases where providing a treatment is not desirable, as with antibiotic prescriptions in many cases, but nor should we assume that because someone is suffering that is necessarily a good thing and symptoms should not be addressed. You would be best to examine each case on its own merits.
I'm a journalist, so just full of questions (I'm not writing an article or anything, I'm just personally interested in this area).
Are you in a position to write an article? I would think it would be quite interesting, but I would suggest interviewing or corresponding with immunologists and medical professionals directly, and doing more reading on basic immunology and the role of vaccines first so as to approach them with a better understanding. That way you can digest and report the fundamentals for your readers/viewers succinctly and spend the time with the professionals getting to the bottom of issues specific to your evolutionary interest.